The Social Life of the Microbiome
the personalized microbiome
A few weeks after you mail out a stool sample to most DTC microbiome test kit companies, you will receive personalized results that identify the microbes in your gut microbiome and their relative abundance and diversity. You will also often receive personalized diet and supplement recommendations based on this composition of your microbiome so that you can modulate the amount of certain microbes. DTC test marketing emphasizes how the individualised nutrition recommendations you receive through their tests are necessary to achieve health according to your unique microbes (Widmer 2021).
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But in what context are such recommendations situated within?
And what are the sociocultural perspectives on the implications of these recommendations?

Recommendations in Context: Personalized Nutrition & Metabolomics
Personalized medicine, now more commonly referred to as precision medicine, is an emerging area of research that seeks to tailor therapeutics to individuals based on their unique biological makeup, often involving their genetics, epigenetics, or transcriptomics (i.e. individual genes and gene activity).
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Clinical applications of precision medicine in Canada are currently primarily within several key spheres - oncology, HIV/AIDS, cystic fibrosis, and rare diseases. Within these spheres, application of emerging research often involves sequencing for specific genetic variants and then offering specific therapeutics that have been shown to be more safe and effective.
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A growing research direction within this field is that of precision nutrition and metabolomics, which similarly seeks to understand how an individual's unique biological makeup through genetics, epigenetics, and transcriptomics may influence different physiological responses to diet and metabolism. For example, in a review article on personalized nutrition, Garcia-Bailo and El-Sohemy (2021) argue that genetic variation should impact dietary advice. In other words, that personalized dietary advice for the consumption or omission of specific nutrients should be provided rather than generalized public health recommendations.
Perspectives from
sts & anthropology
Precision medicine has been studied by social scientists to understand the conceptualizations, contexts, and implications of this research field.
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Chorev (2020) wrote about a precision oncology clinical trial, and found that multiplicity and uncertainty were key themes that emerge from the research in practice. An abundance of data is obtained from patients in the trial leading to an uncertainty in treatment choice, yet the technology (genetic/transcriptomic sequencing, algorithms) does not necessarily narrow down this multiplicity or reduce uncertainty but instead attempts to reconfigure and rationalize treatment options in molecular terms. This can be applied to the personalized recommendations offered by DTC microbiome tests - in an incredibly complex world of conflicting nutrition information, personalized recommendations on what foods to eat or avoid don't necessarily make dietary decisions simpler, but rather re-frame it in micro-scale terms of for example avoiding spinach containing oxalates and purines to improve your poor oxalate metabolism pathway score.
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In her analysis of TED talks on the microbiome, Penelope Ironstone (2019) presents how narratives are constructed of a citizen scientist who attempts to manipulate their microbiome as a "prosumer, both producer and consumer, of scientific and biomedical research”. The implication of this position, she argues:
Is that results from personal microbial genomics tests may induce action by individuals who lack sufficient expertise to know how their interventions may negatively impact their health. In other words, the human microbiome is not simply an idea worth spreading, it is one that spreads in contexts that have very real social, political, economic, legal, and other consequences, and it has the capacity to yield unexpected and deleterious results
Another thoughtful analysis is presented by Pinel and Svendsen (2021) in their research on Danish biobanks used for precision therapeutics. The outline how biological data flows from personal, to collective, to personalized. Applied to this context of precision microbiome research, first stool samples are collected and sequenced from individuals, creating a set of personal data. This data then becomes added to a collective biobank from which it is compared against, finding similarities and differences in abundance patterns, diversity, and expression patterns to create a database from which personalized recommendations can be extracted. This offers a useful point of reflection on the nature of microbiomic data and the collective biobanks from which individual recommendations emerge ??
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Importantly, what might these recommendations mean for individuals? Levin (2020) wrote on precision metabolomics research and suggested that persons within its clinical application were defined relationally - not socially, but statistically within the database that their personal data is entered. She writes, "as metabolomics research looks for more personalized approaches to disease diagnosis and treatment, it makes up persons as metabolic patterns and relationships.” This is another point for reflection, in that the division or co-existence between an individual and their microbiome - does the sequenced data and its personalized recommendations make us who we are? How might people become defined by the characterization of their microbiome?
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references
Chorev, Nadav Even. 2020. “Personalized Medicine in Practice: Postgenomics from Multiplicity to Immutability.” Body & Society 26, 1: 26- 54. https://doi.org/10.1177/1357034X19886925
Garcia-Bailo, Bibiana and Ahmed El-Sohemy. 2021. “Recent advances and current controversies in genetic testing for personalized nutrition.” Current Opinion in Clinical Nutrition & Metabolic Care 24: 289-295. DOI:10.1097/MCO.0000000000000763
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Ironstone, Penelope. 2019. “The Microbiome as TED Knows It: Popular Science Communication and the Neoliberal Subject.” Canadian Journal of Communication 44, 2: PP157–74. https://doi.org/10.22230/cjc.2019v44n2a3339.
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Levin, Nadine. 2014. “Making up “persons” in personalized medicine with metabolomics.” Somatosphere, February 19, 2014. http://somatosphere.net/2014/making-up-persons-in-personalized-medicine-with-metabolomics.html/
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Pinel, Clémence and Mette N. Svendsen. 2021. “In search of ‘extra data’: Making tissues flow from personal to personalised medicine.” Big Data & Society July-December: 1-12.
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Widmer, Alexandra. 2021. "Positioning Human Microbiome DTC Tests: On the search for health, data and alternatives amid the financialisation of life." Medicine Anthropology Theory 8 (2): 1–12.https://doi.org/10.17157/mat.8.2.5127
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